BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB027F10SP1|AL428767
(820 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig909 622 e-178
3x_Contig702 565 e-161
>3x_Contig909
Length = 3333
Score = 622 bits (304), Expect = e-178
Identities = 332/354 (93%)
Strand = Plus / Plus
Query: 1 tggwaagcggtgatgttcgtttcagattcacactaactgactttgataaacagtttgacc 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 tggaaagcggtgatgttcgtttcagattcacactaactgactttgataaacagtttgacc 3039
Query: 61 aattcadagccaagadataggcgttgaactgtataadttatatagatggttgacacgttg 120
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3040 aattcaaagccaagaaataggcgttgaactgtataaattatatagatggttgacacgttg 3099
Query: 121 ttcatagcttaagtcacttatatwtwcdtdctatgacataaacgtcaaadtggaaamaca 180
||||||||||||||||||||||| | | | ||||||||||||||||||| |||||| |||
Sbjct: 3100 ttcatagcttaagtcacttatatatacatactatgacataaacgtcaaaatggaaacaca 3159
Query: 181 cataadatacaacctacaatttatacacattgcdaggkacggctttcataaacaccagag 240
||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 3160 cataaaatacaacctacaatttatacacattgcaaggaacggctttcataaacaccagag 3219
Query: 241 gacggtwagggtacagtwaagtgcatgakatgcagtcactgtagccaaggttacctttcc 300
|||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3220 gacggtaagggtacagtaaagtgcatgacatgcagtcactgtagccaaggttacctttcc 3279
Query: 301 agtaaccgakwdtttctcgaagaagagcaacaagwtcatgggadatdtttgcta 354
||||||||| |||||||||||||||||||||| |||||||| || |||||||
Sbjct: 3280 agtaaccgaaaatttctcgaagaagagcaacaagatcatgggaaatatttgcta 3333
>3x_Contig702
Length = 2831
Score = 565 bits (276), Expect = e-161
Identities = 296/302 (98%), Gaps = 1/302 (0%)
Strand = Plus / Plus
Query: 520 ttgctgttagtttcgtttactatkactcggactttgtgagttcttg-tgagagtgtgttt 578
||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||
Sbjct: 2 ttgctgttagtttcgtttactataactcggactttgtgagttcttgctgagaatgtgttt 61
Query: 579 tttgaatagacattcttctcttctaakactagtaaaggtactatcctctctatttgttta 638
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 62 ttagaatagacattcttctcttctaaaactagtaaaggtactatcctctctatttgttta 121
Query: 639 ccttatattgadagaagaaataataattcatcaagtggcagtcatcgcatatttaagaat 698
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ccttatattgaaagaagaaataataattcatcaagtggcagtcatcgcatatttaagaat 181
Query: 699 gacgacttctaagcgaaatagactgctgaaggaacttctgattgatgataatatacattc 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gacgacttctaagcgaaatagactgctgaaggaacttctgattgatgataatatacattc 241
Query: 759 caaagtacaggctgatttatgggacgctggagatggtggagtacgacggaaacgcaccag 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caaagtacaggctgatttatgggacgctggagatggtggagtacgacggaaacgcaccag 301
Query: 819 ag 820
||
Sbjct: 302 ag 303
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.716 1.34
Gapped
Lambda K H
1.42 0.716 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4022
Number of Sequences: 1807
Number of extensions: 4022
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 2
length of query: 820
length of database: 10,358,551
effective HSP length: 16
effective length of query: 804
effective length of database: 10,329,639
effective search space: 8305029756
effective search space used: 8305029756
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.7 bits)
S1: 11 (23.0 bits)
S2: 49 (100.8 bits)